Laboratory of Pollen Biology
Institute of Experimental Botany, Czech Academy of Sciences
Publications - 21st century
2024
Sze H, Klodová B, Ward JM, Harper JF, Palanivelu R, Johnson MA, Honys D (2024) A wave of specific transcript and protein accumulation accompanies pollen dehydration. Plant Physiology, accepted, dot: 10.1093/plphys/kiae177. PDF
Raabe K, Sun L, Schindfessel C, Honys D, Geelen D (2024) Words of caution regarding T-DNA-associated mutagenesis in plant reproduction research. Journal of Experimental Botany erae14, dot: 10.1093/jxb/erae114. Link
Wiese AJ, Torutaeva E, Honys D (2024) The transcription factors and pathways underpinning male reproductive development in Arabidopsis. Frontiers in Plant Science 15, dot: 10.3389/fpls.2024.1354418. PDF
Fragkostefanakis S, Lieberman-Lazarovich M, Honys D (2024) Resilience in crop reproduction for food security: introducing RECROP COST action. Plant Reproduction, doi: 10.1007/s00497-024-00497-8. PDF
2023
Klodová B, Potěšil D, Steinbachová L, Michailidis C, Lindner AC, Hackenberg D, Becker JD, Zdráhal Z, Twell D, Honys D (2023) Regulatory dynamics of gene expression in the developing male gametophyte of Arabidopsis. Plant Reproduction 36: 213–241. doi: 10.1007/s00497-022-00452-5. PDF
Dvořák Tomaštíıková W, Yang F, Mlynárová K, Hafidh S, Schořová Š, Kusová A, Pernisová M, Přerovská T, Klodová B, Honys D, Fajkus J, Pečinka A, Procházková Schrumpfová P (2023) RUVBL proteins are involved in plant gametophyte development. Plant Journal 114: 325-337, dni: 10.1111/tpj.16136. PDF
Ambastha V, Nevo Y, Matityhu I, Honys D, Leshem Y (2023) Discovery of microRNAs in Pyrus stigma exudates opens new research avenues in Horticulture. PNAS Nexus 2: pgad332. doi: 10.1093/pnasnexus/pgad332. PDF
Lelkes E, Jemelková J, Holá M, Stefanovie B, Kolesar P, Vágnerová R, Dvořák Tomaštíková E, Pečinka A, Angelis KJ, Paleček JJ (2023) Characterization of the conserved features of the NSE6 subunit of the Physcomitrium patens SMC5/6 complex. Plant Journal Early Access. dot: 10.1111/tpj.16282. PDF
Kusová A, Steinbachová L, Přerovská T, Záveská Drábková L, Paleček J, Khan A, Rigoova G, Gadiou Z, Jourdain C, Stricker T, Schubert D, Honys D, Procházková Schrumpfová P (2023) Completing the TRB family: newly characterized members show ancient evolutionary origins and distinct localization, yet similar interactions. Plant Molecular Biology Early Access, doi: 10.1007/s11103-023-01348-2. PDF
Angelis KJ, Záveská Drábková L, Vágnerová R, Holá M (2023) RAD51 and RAD51B Play Diverse Roles in the Repair of DNA Double Strand Breaks in Physcomitrium patens. Genes 14(2):305. doi: 10.3390/genes14020305. PDF
Vaňková R, Burketová L, Brzobohatý B, Černý M, Hafidh S, Hejátko J, Honys D, Hoyerová K, Juříček M, Martinec J, Moravec T, Pečenková T, Petrášek J, Pospíšil J, Retzer K, Robert HS, Štorchová H, Vaněk T, Žárský V (2023) Responses to abiotic and biotic stresses- from the cellular level to fruit development- contributions of the Czech Centre for Experimental Plant Biology. Biologia Plantarum 67: 166-174. dot: 10.32615/bp.2023.028. PDF
2022
Kulichová K, Pieters J, Kumar V, Honys D, Hafidh S (2022) A plastid-bound ankyrin repeat protein controls gametophyte and early embryo development in Arabidopsis thaliana. Frontiers in Plant Science 12. doi: 10.3389/fpls.2022.767339. Link
Gomez-Mena C, Honys D, Datla R, Testillano PS (2022) Editorial: Advances in Pollen Research: Biology, Biotechnology, and Plant Breeding Applications. Frontiers in Plant Science 13: 876502, doi: 10.3389/fpls.2022.876502. PDF
2021
Hafidh S, Honys D (2021) Reproduction Multitasking: The Male Gametophyte. Annual Review of Plant Biology 72: 581-614. doi: 10.1146/annurev-arplant-080620-021907, Link
Julca I, Ferrari C, Flores-Tornero M, Proost S, Lindner A-C, Hackenberg D, Steinbachová L, Michailidis C, Gomes Pereira S, Shekhar Misra C, Kawashima T, Borg M, Berger F, Goldberg J, Johnson M, Honys D, Twell D, Sprunck S, Dresselhaus T, Becker JD, Mutwil M (2021) Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants. Nature Plants 7, 1143-1159. https://doi.org/10.1038/s41477-021-00958-2. Link
Biley E, Hafidh S, Cruz-Gallardo I, Litholdo, CG Jr, Jean V, Carpentier M-C, Picart. C, Kulichová K, Honys D, Conte MR, Deragon J-M, Bousquet-Antonelli C (2021) LARP6C regulates selective mRNA translation to promote pollen tube guidance in Arabidopsis thaliana.. The Plant Cell 33: 2637-2661, https://doi.org/10.1093/plcell/koab131. Link
Chaturvedi P, Wiese AJ, Ghatak A, Záveská Drábková L, Weckwerth W, Honys D (2021) Heat stress response mechanisms in pollen development. New Phytologist 231: 571-585, doi: 10.1111/nph.17380. PDF
Fajkus P, Kilar AM, Nelson ADL, Holá M, Peška V, Goffová I, Fojtová M, Zachová D, Fulnečková J, Fajkus J (2021) Evolution of Plant Telomerase RNAs: Farther to the Past, Deeper to the Roots. Nucleic Acids Research 49(13): 7680-7694., DOI: 10.1093/nar/gkab545. PDF
Wiese AJ, Steinbachová L, Timofejeva L, Čermák V, Klodová B, Ganji RS, Limones-Mendez M, Bokvaj P, Hafidh S, Potěšil D, Honys D (2021) Arabidopsis bZIP18 and bZIP52 Accumulate in Nuclei Following Heat Stress where They Regulate the Expression of a Similar Set of Genes. International Journal of Molecular Sciences 22: 530, doi: 10.3390/ijms22020530. PDF
Náprstková A, Malínská K, Záveská Drábková L, Billey E, Náprstková D, Sýkorová E, Bousquet-Antonelli C, Honys D (2021) Characterization of ALBA family expression and localization in Arabidopsis thaliana generative organs. International Journal of Molecular Sciences 22: 1652, doi: 10.3390/ijms22041652. PDF
Klodová B, Fíla J (2021) A Decade of Pollen Phosphoproteomics. International Journal of Molecular Sciences 22(22), 12212; DOI: 10.3390/ijms222212212. PDF
Holá M, Vágnerová R, Angelis KJ (2021) Kleisin NSE4 of the SMC5/6 complex is necessary for DNA double strand break repair, but not for recovery from DNA damage in Physcomitrella (Physcomitrium patens). Plant Molecular Biology, early access. doi: 10.1007/s11103-020-01115-7. Link
Steinbachová L, Matoušek J, Steger G, Matoušková H, Radišek S, Honys D (2021) Transformation of Seed Non-Transmissible Hop Viroids in Nicotiana benthamiana Causes Distortions in Male Gametophyte Development. Plants 10(11), 2398; doi: 10.3390/plants10112398. PDF
Flores-Tornero M, Wang L, Potěšil D, Hafidh S, Vogler F, Zdráhal Z, Honys D, Sprung S, Dresselhaus T (2021) Comparative analyses of angiosperm secretomes identify apoplastic pollen tube functions and novel secreted peptides. Plant Reproduction 34: 47-60. doi: 10.1007/s00497-020-00399-5. PDF
Záveská Drábková L, Honys D, Motyka V (2021) Evolutionary diversification of cytokinin‐specific glucosyltransferases in angiosperms and enigma of missing cis‐zeatin O‐glucosyltransferase gene in Brassicaceae. Scientific Reports 11: 7885. doi: 10.1038/s41598-021-87047-8. PDF
Záveská Drábková L, Pokorná E, Dobrev PI, Kůrková J, Steinbachová L, Honys D, Motyka V (2021) Hormonome Dynamics During Microgametogenesis in Different Nicotiana Species. Frontiers in Plant Science 12: 735451, doi: 10.3389/fpls.2021.735451. Link
Mazuecos-Aguilera I, Romero-García AT, Klodová B, Honys D, Fernández-Fernández MC, Ben-Menni Schuler S, Dobritsa A, Suárez-Santiago VN (2021) The role of INAPERTURATE POLLEN1 as a pollen aperture factor is conserved in the basal eudicot Eschscholzia californica (Papaveraceae). Frontiers in Plant Science 12: 701286, doi: 10.3389/fpls.2021.701286, PDF
Pokorná E, Hluska T, Galuszka P, Rashotte AM, Dobrev PI, Záveská Drábková L, Filipi T, Holubová K, Plíhal O, Hallmark TH, Filepová R, Malbeck J, Novák O, Spíchal L, Brzobohatý B, Mazura P, Doležálková L, Zahajská L, Motyka V (2021): Cytokinin N-glucosides: occurrence, metabolism and biological activities in plants. Biomolecules 11: 24, doi: 10.3390/biom11010024. PDF
Fíla J (2021) Mystérium rozmnožování krytosemenných rostlin. Vesmír 100: 118. Link
2020
Kulichová K, Kumar V, Steinbachová L, Klodová B, Timofejeva L, Juříček M, Honys D, Hafidh S (2020) PRP8A and PRP8B spliceosome subunits act co-ordinately to control pollen tube attraction in Arabidopsis. Development 147(11): dev186742. PDF
Gu N, Tamada Y, Imai A, Palfalvi G, Kabeya Y, Shigenobu S, Ishikawa M, Angelis KJ, Chen Ch, Hasebe M (2020) DNA damage triggers reprogramming of differentiated cells into stem cells in Physcomitrella. Nature Plants 6: 1098-1105, https://doi.org/10.1038/s41477-020-0745-9. Link
Biley E, Hafidh S, Cruz-Gallardo I, Litholdo, CG Jr, Jean V, Carpentier M-C, Picart. C, Kulichová K, Honys D, Conte MR, Deragon J-M, Bousquet-Antonelli C (2020) LARP6C regulates selective mRNA translation to promote pollen tube guidance in Arabidopsis thaliana.. bioRxiv, doi: 10.1101/2020.11.27.401307 Link
Oh S-A, Hoai T, Park H-J, Zhao M, Twell D, Honys D, Park S-K (2020) MYB81, a microspore-specific GAMYB transcription factor, promotes pollen mitosis I and cell lineage formation in Arabidopsis. Plant Journal 101: 590-603, doi: 10.1111/tpj.14564. PDF
Julca I, Ferrari C, Flores-Tornero M, Proost S, Lindner A-C, Hackenberg D, Steinbachová L, Michailidis C, Gomes Pereira S, Shekhar Misra C, Kawashima T, Borg M, Berger F, Goldberg J, Johnson M, Honys D, Twell D, Sprunck S, Dresselhaus T, Becker JD, Mutwil M (2020) Comparative transcriptomic analysis reveals conserved transcriptional programs underpinning organogenesis and reproduction in land plants. bioRxiv, doi: 10.1101/2020.10.29.361501. Link.
Fíla J, Klodová B, Potěšil D, Juříček M, Šesták P, Zdráhal Z, Honys D (2020) The beta Subunit of Nascent Polypeptide Associated Complex Plays A Role in Flowers and Siliques Development of Arabidopsis thaliana. International Journal of Molecular Sciences 21(6): 2065, doi: 10.3390/ijms21062065. PDF
Matoušek J, Steinbachová L, Záveská Drábková L, Kocábek T, Potěšil D, Kumar Mishra A, Honys D, Steger G (2020) Elimination of Viroids from Tobacco Pollen Involves a Decrease in Propagation Rate and an Increase of the Degradation Processes. International Journal of Molecular Sciences 21(8): 3029, doi: 10.3390/ijms21083029. PDF
Pečinka A, Chevalier C, Colas I, Kalantidis K, Varotto S, Krugman T, Michailidis C, Vallés M-P, Muñoz A, Pradillo M (2020) Chromatin dynamics during interphase and cell division: similarities and differences between model and crop plants. Journal of Experimental Botany, 71(17): 5205-5222. doi: 10.1093/jxb/erz457. PDF
Záveská Drábková L (2020): Herbarium specimens: A Treasure for DNA extraction, an update. In: Pascale Besse (ed.), Molecular Plant Taxonomy: Methods and Protocols, Methods in Molecular Biology, vol. 2222: 69-88, doi: 10.1007/978-1-0716-0997-2_4. Link
Hafidh S, Honys D (2020) Isolation of the pistil-stimulated pollen tube secretome. In: Anja Geitmann (ed.) The Pollen Tube: Methods and Protocols. Methods in Molecular Biology, vol. 2160, DOI: 10.1007/978-1-0716-0672-8_4, Springer Science+Business Media, LLC, part of Springer Nature. pp 41-72. PDF
Shrestha A, Kumar Mishra A, Matoušek J, Steinbachová L, Potěšil D, Nath VS, Awasthi P, Kocábek T, Jake J, Záveská Drábková L, Zdráhal Z, Honys D, Steger G (2020) Integrated Proteo-Transcriptomic Analyses Reveal Insights into Regulation of Pollen Development Stages and Dynamics of Cellular Response to Apple fruit crinkle viroid (AFCVd)-Infection in Nicotiana tabacum. International Journal of Molecular Sciences 21(22): 8700, doi: 10.3390/ijms21228700, Link.
Zvanarou S, Vágnerová R, Mackievic V, Usnich S, Smolich I, Sokolik A, Yu M, Huang X, Angelis KJ, Demidchik V (2020) Salt stress triggers generation of oxygen free radicals and DNA breaks in Physcomitrella patens protonema. Environmental and Experimental Botany 180: 104236. Link
2019
Raabe K, Honys D, Michailidis C (2019) The role of eukaryotic initiation factor 3 in plant translation regulation. Plant Physiol Biochem 145: 75-83. DOI: 10.1016/j.plaphy.2019.10.015. PDF
Schořová Š, Fajkus J, Záveská Drábková L, Honys D, Procházková Schrumpfová P (2019) The Plant Pontin and Reptin Homologues, RuvBL1 and RuvBL2a, Colocalize with TERT and TRB Proteins In Vivo, and Participate in Telomerase Biogenesis. Plant Journal 98: 195-212. DOI: 10.1111/tpj.14306. PDF
Goffova I, Vagnerova R, Peska V, Franek M, Havlova K, Hola M, Zachova D, Fojtova M, Cuming A, Kamisugi Y, Angelis KJ, Fajkus J (2019) Roles of RAD51 and RTEL1 in telomere and rDNA stability in Physcomitrella patens. Plant Journal 98: 1090-1105. DOI: 10.1111/tpj.14304
Záveský L, Jandáková E, Weinberger V, Minář L, Hanzíková V, Dušková D, Záveská Drábková L, Hořínek A (2019) Ovarian Cancer: Differentially Expressed microRNAs in Tumor Tissue and Cell-Free Ascitic Fluid as Potential Novel Biomarkers. Cancer Investigation, 37:9, 440-452, DOI: 10.1080/07357907.2019.1663208. PDF
Záveský L, Jandáková E, Weinberger V, Minář L, Hanzíková V, Dušková D, Záveská Drábková L, Svobodová I, Hořínek A (2019) Ascites-Derived Extracellular microRNAs as Potential Biomarkers for Ovarian Cancer. Reprod Sci 26: 510-522. PDF
2018
Hafidh SS, Potěšil D, Müller K, Fíla J, Michailidis C, Herrmannová A, Feciková J, Ischebeck T, Valášek LS, Zdráhal Z, Honys D (2018) Dynamics of Nicotiana tabacum pollen sequestrome defined by subcellular coupled omics. Plant Physiology, 178: 258-282. DOI: https://doi.org/10.1104/pp.18.00648, PDF
Dokládal L, Benková E, Honys D, Dupláková N, Lee LY, Gelvin SB, Sýkorová E (2018) An armadillo-domain protein participates in a telomerase interaction network. Plant Mol Biol 97: 407-420. PDF
Honys D (2018) Růst pylové láčky: od opylení k oplození. Nová Botanika 1: 4-6. LINK
2017
Záveská Drábková L, Honys D (2017) Evolutionary history of callose synthases in terrestrial plants with emphasis on proteins involved in male gametophyte development. PLoS One 12(11): e0187331. 10.1371/journal.pone.0187331. PDF
Vágnerová R, Lukešová A, Lukeš M, Rožnovská P. Holá M, Fulnečková J, Fajkus J, Angelis KJ (2017) Evolutionarily Distant Streptophyta Respond Differently to Genotoxic Stress. Genes 8: 331. PDF
Fíla J, Záveská Drábková L, Gibalová A, Honys D (2017) When Simple Meets Complex: Pollen and the -Omics. In: Gerhard Obermeyer, José Feijó (eds.) Pollen Tip Growth, From Biophysical Aspects to Systems Biology. Springer-Verlag Berlin, Heidelberg, ISBN 978-3-319-56644-3, DOI 10.1007/978-3-319-56645-0_10. PDF
Fíla J, Honys D (2017) Phosphoprotein Enrichment from Tobacco Mature Pollen Crude Protein Extract. Methods Mol Biol 1669: 265-274. doi: 10.1007/978-1-4939-7286-9_21. PDF
Jurečková JF, Sýkorová E, Hafidh S, Honys D, Fajkus J, Fojtová M (2017) Tissue-specific expression of telomerase reverse transcriptase gene variants in Nicotiana tabacum. Planta 245: 549-561. DOI 10.1007/s00425-016-2624-1. PDF
Majerská J, Schrumpfová PP, Dokládal L, Schořová Š, Stejskal K, Obořil M, Honys D, Kozáková L, Polanská PS, Sýkorová E (2017) Tandem affinity purification of AtTERT reveals putative interaction partners of plant telomerase in vivo. Protoplasma 254: 1547-1562. DOI 10.1007/s00709-016-1042-3. PDF
Záveská Drábková L, Pospíšková M, Businský R (2017) Phylogenetic relationships and taxonomy within the genus Spiraea (Rosaceae) inferred from AFLP markers and morphology. Botanical Journal of the Linnean Society 10.1093/botlinnean/box071
Do D, Záveská Drábková L (2017) Herbarium tale: The utility of dry specimens for DNA barcoding Juncaceae. Plant Systematics and Evolution 10.1007/s00606-017-1476-x
Gibalová A, Steinbachová L, Hafidh S, Bláhová V, Gadiou Z, Michailidis C, Műller K, Pleskot R, Dupláková N, Honys D (2017). Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reproduction 30: 1-17. DOI 10.1007/s00497-016-0295-5. PDF
Honys D, Honysová B (2017) Vývoj pylu: od mikrosporocytu ke zralému pylovému zrnu. Botanika 5: 4-6. Fulltext
2016
Hafidh D, Potěšil D, Fíla J, Čapková V, Zdráhal Z, Honys D (2016) Quantitative Proteomics of the Tobacco Pollen tube-Secretome Identifies Novel Pollen Tube Guidance Proteins Important for Fertilization. Genome Biology 17: 81. doi:10.1186/s13059-016-0928-x. PDF
Fíla J, Radau S, Matros A, Hartmann A, Scholz U, Feciková J, Mock H-P, Čapková V, Peiman Zahedi R, Honys D (2016) Phosphoproteomics profiling of tobacco mature pollen and pollen activated in vitro. Mol Cel Proteomics 15: 1338-1350. doi: 10.1074/mcp.M115.051672. PDF
Dupláková N, Dobrev PI, Reňák D, Honys D (2016) Rapid separation of Arabidopsis male gametophyte developmental stages using a Percoll gradient. Nature Protocols 11(10): 1817-1832. PDF
Hafidh D, Fíla J, Honys D (2016) Male gametophyte development and function in angiosperms: a general concept. Plant Reproduction 29: 31-51, doi: 10.1007/s00497-015-0272-4. PDF
Hofer M, Falk M, Komůrková D, Falkova I, Bačíková A, Klejdus B, Pagáčová E, Štefančíková L, Weiterova L, Angelis KJ, Kozubek S, Dušek L, Galbavý Š (2016) Two New Faces of Amifostine: Protector from DNA Damage in Normal Cells and Inhibitor of DNA Repair in Cancer Cells. Journal of Medicinal Chemistry 59: 3003-3017. DOI: 10.1021/acs.jmedchem.5b01628. PDF
Rollo A, Lojka B, Honys D, Mandák B, Chia Wong JA, Santos C, Costa R, Quintela-Sabarís C, Ribeiro MM (2016) Genetic diversity and hybridization in the two species Inga ingoides and Inga edulis: potential applications for agroforestry in the Peruvian Amazon. Annals of Forest Science 73: 425-435. doi: 10.1007/s13595-015-0535-0. PDF
Balážová A, Kolář F, Fíla J, Mikát M, Baláž V (2016) Rozmnožování z pohledu evoluce. Námluvy, sňatky a podvody v říši živočichů a rostlin. Academia. Praha. ISBN 978-80-200-2590-6.
2015
Bokvaj P, Hafidh S, Honys D (2015) Transcriptome profiling of male gametophyte development in Nicotiana tabacum. Genomics Data 3: 106-111. PDF
Dokládal L, Honys D, Rana R, Lee L-Y, Gelvin S, Sýkorová E (2015) cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-telomeric Roles of Arabidopsis Telomerase. Front Plant Sci 6:985. PDF
Fojtová M, Sýkorová E, Najdekrová L, Polanská P, Zachová D, Vágnerová R, Angelis KJ, Fajkus J (2015) Telomere dynamics in the lower plant Physcomitrella patens. Plant Mol Biol 87: 591-601. PDF
Furukawa T, Angelis KJ, Britt AB (2015) Arabidopsis DNA polymerase lambda mutant is mildly sensitive to DNA double strand breaks but defective in integration of a transgene. Front Plant Sci 6: 357. PDF
Holá M, Vágnerová R, Angelis KJ (2015) Mutagenesis during plant responses to UVB radiation. Plant Physiol Biochem 93: 29-33. PDF
2014
Reňák D, Gibalová A, Šolcová K, Honys D (2014) A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell & Environ 37: 670-683. PDF
Fíla J, Čapková V, Honys D (2014) Phosphoproteomic studies in Arabidopsis and tobacco male gametophytes. Biochem Soc Trans 42: 383-387. PDF
Hafidh S, Potěšil D, Fíla J, Feciková J, Čapková V, Zdráhal Z, Honys D (2014) In search of ligands and receptors of the pollen tube: the missing link in pollen tube perception. Biochem Soc Trans 42: 388-394. PDF
da Costa-Nunes JA, Capitão C, Kozak J, Costa-Nunes P, Ducasa GM, Pontes O, Angelis KJ (2014) The AtRAD21.1 and AtRAD21.3 Arabidopsis cohesins play a synergistic role in somatic DNA double strand break damage repair. BMC Plant Biol 14: 353. PDF
2013
Ding Z, Wang B, Moreno I, Dupľáková N, Simon S, Carraro N, Reemmer J, Pěnčík A, Chen X, Tejos R, Skůpa P, Pollmann S, Mravec J, Petrášek J, Zažímalová E, Honys D, Rolčík J, Murphy A, Orellana A, Geisler M, Friml J (2013) Corrigendum: ER-localized auxin transporter PIN8 regulates auxin homeostasis and male gametophyte development in Arabidopsis. Nature Communications 4:1421. DOI:10.1038/ncomms2452.
Pičmanová M, Reňák D, Feciková J, Růžička P, Mikšátková P, Lapčík O, Honys D (2013) Functional expression and subcellular localization of pea polymorphic isoflavone synthase CYP93C18. Biol Plant 57(4): 635-645.
Hafidh S, Potěšil D, Zdráhal Z, Honys D (2013) DEAD-box helicases are among the constituents of the tobacco pollen mRNA storing bodies. J Plant Biochem Physiol 1:114. doi: 10.4172/2329-9029.1000114.
Holá M, Kozák J, Vágnerová R, Angelis KJ (2013) Genotoxin Induced Mutagenesis in the Model PlantPhyscomitrella patens. BioMed Res Int 2013:535049.
Fíla J, Kodejš K, Mikát M, Nunvář J, Smyčka J, Synek P, Zouhar P (2013) Komunikace. Učebnice biologie. Ed. Jan Fíla. Česká zemědělská univerzita v Praze. ISBN 978-80-213-2386-5.
2012
Fíla J, Matros A, Radau S, Peiman Zahedi R, Čapková V, Mock H-P, Honys D (2012) Revealing phosphoproteins playing role in tobacco pollen activated in vitro. Proteomics 12(21): 3229-3250.
Ding Z, Wang B, Moreno I, Dupľáková N, Simon S, Carraro N, Reemmer J, Pěnčík A, Chen X, Tejos R, Skůpa P, Pollmann S, Mravec J, Petrášek J, Zažímalová E, Honys D, Rolčík J, Murphy A, Orellana A, Geisler M, Friml J (2012) ER-localized auxin transporter PIN8 regulates auxin homeostasis and male gametophyte development in Arabidopsis. Nature Communications 3:941, doi: 10.1038/ncomms1941.
Hafidh S, Breznenová K, Růžička P, Feciková J, Čapková V, Honys D (2012) Comprehensive analysis of tobacco pollen transcriptome unveils common pathways in polar-cell expansion and underlying heterochronic shift during spermatogenesis. BMC Plant Biology 12:24.
Hafidh S, Breznenová K, Honys D (2012) De novo post-pollen mitosis II tobacco pollen tube transcriptome. Plant Signaling Behavior 7(8): 918-921.
Reňák D, Dupľáková N, Honys D (2012) Wide-scale screening of T-DNA lines for transcription factor genes affecting male gametophyte development in Arabidopsis. Sex Plant Reprod 25(1): 39-60.
Fíla J, Honys D (2012) Enrichment techniques employed in phosphoproteomics. Amino Acids 43: 1025-1047.
Kamisugi Y, Schaefer DG, Kozák J, Charlot F, Vrielynck N, Holá M, Angelis KA, Cuming AC, Nogué F (2012) MRE11 and RAD50, but not NBS1, are essential for gene targeting in the moss Physcomitrella patens. Nucleic Acids Res 40(8): 3496-3510.
Pičmanová M, Koblovská R, Lapčík O, Honys D (2012) Isoflavone synthase genes in legumes and non-leguminous plants. 2012 ICBEB: 344-347.
Fíla J, Matros A, Čapková V, Mock H-P, Honys D (2012) Specificity of MOAC enrichment applied for mature pollen phosphoproteomic studies. 2012 ICBEB: 523-526.
Baláž V, Balážová A, Fíla J, Kolář F, Mikát M (2012) Láska, sex a něžnosti v říši živočichů a rostlin. Učebnice biologie. Ed. Alena Balážová. Česká zemědělská univerzita v Praze. ISBN 978-80-213-2288-2.
2011
Böhmdorfer G, Schleiffer A, Brunmeir R, Ferscha S, Nizhynska V, Kozák J, Angelis KJ, Kreil DP, Schweizer D (2011) GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein, is involved in somatic homologous recombination in Arabidopsis. Plant J 67: 420-433.
Hafidh S, Čapková V, Honys D (2011) Safe keeping the message: mRNP complexes tweaking after transcription. Adv Exp Med Biol 722: 118-136.
Fíla J, Čapková V, Feciková J, Honys D (2011) Impact of homogenization and protein extraction conditions on the obtained tobacco proteomic pattern. Biol Plant 55(3): 499-506.
Szabová J, Růžička P, Verner Z, Hampl V, Lukeš J (2011) Experimental Examination of EFL and MATX Eukaryotic Horizontal Gene Transfers: Coexistence of Mutually Exclusive Transcripts Predates Functional Rescue. Mol Biol Evol 28(8): 2371–2378.
Fidlerová AA, Honys D (2011) Jan Evangelista Purkyně (nejen) slezským rostlinozpytcem. Živa 59(5): 214-217.
Fíla J, Pánek T, Sekereš J (2011) Tvary v živé přírodě. Učebnice biologie. Ed. Jan Fíla. Česká zemědělská univerzita v Praze. ISBN 978-80-213-2191-5.
2010
Šmídková M, Müller M, Thönes N, Piuko K, Angelisová P, Velemínský J, Angelis KJ (2010) Transient expression of human papillomavirus type 16 virus-like particles in tobacco and tomato using a tobacco rattle virus expression vector. Biol Plant 54(3) 451-460.
Šmídková M, Holá M, Angelis KJ (2010) Efficient biolistic transformation of the moss Physcomitrella patens. Biol Plant 54(4): 777-780.
2009
Gibalová A, Reňák D, Matczuk K, Dupľáková N, Cháb D, Twell D, Honys D (2009) AtbZIP34 is required for Arabidopsis pollen wall patterning and the control of several metabolic pathways in developing pollen. Plant Molecular Biology 70(5): 581-601.
Honys D, Reňák D, Feciková J, Jedelský PL, Nebesářová J, Dobrev P, Čapková V (2009) Cytoskeleton-associated large RNP complexes in tobacco male gametopyte (EPPs) are associated with ribosomes and are involved in protein synthesis, processing and localisation. Journal of Proteome Research 8(4): 2015-2031.
Kozák J, West CE, White C, da Costa-Nunes JA, Angelis KJ (2009) Rapid repair of DNA double strand breaks in Arabidopsis thaliana is dependent on proteins involved in chromosome structure maintenance. DNA Repair 8: 413-419.
Waterworth W, Kozák J, Provost CM, Bray CM, Angelis KJ, West CE (2009) DNA ligase 1 deficient plants display severe growth defects and delayed repair of both DNA single and double strand breaks. BMC Plant Biol 9: 79.
2008
Hoelzl C, Glatt H, Meinl W, Sontag G, Haidinger G, Kundi M, Simic T, Chakraborty A, Bichler J, Ferk F, Angelis KJ, Nersesyan A, Knasmüller S (2008) Consumption of Brussels sprouts protects peripheral human lymphocytes against 2-amino-1- methyl-6-phenylimidazo[4,5-b]pyridine (PhIP) and oxidative DNA-damage: results of a controlled human intervention trial. Mol Nutr Food Res 52: 330-341.
Honys D, Dupľáková N, Reňák D (2008) On Line Tools for Presentation and Analysis of Plant Microarray Data. In Martina K. Moretti and Lorenzo J. Rizzo (eds.) Oligonucleotide Array Sequence Analysis, Nova Publishers, ISBN 978-1-60456-542-3, pp 265-295.
Kosová K, Holková L, Prášil IT, Prášilová P, Bradáčova M, Vitámvás P, Čapková V (2008) Expression of dehydrin 5 during the development of frost tolerance in barley (Hordeum vulgare) J Plant Physiol 165 (11): 1142-1151.
2007
Bichler J, Cavin C, Simic T, Chakraborty A, Ferk F, Hoelzl C, Schulte-Hermann R, Kundi M, Haidinger G, Angelis K, Knasmüller S (2007) Coffee consumption protects human lymphocytes against oxidative and 3-amino-1-methyl-5H-pyrido[4,3-b]indole acetate (Trp-P-2) induced DNA-damage: Results of an experimental study with human volunteers. Food Chem Toxicol 45: 1428-1436.
Dupľáková N, Reňák D, Hovanec P, Honysová B, Twell D, Honys D (2007) Arabidopsis Gene Family Profiler (aGFP) - user-oriented transcriptomic database with easy-to-use graphic interface BMC Plant Biology 7:39.
Vitámvás P, Saalbach G, Prášil IT, Čapková V, Opatrná J, Ahmed J (2007) WCS120 protein family and proteins soluble upon boiling in cold-acclimated winter wheat. J Plant Physiol 164(9): 1197-1207.
Zažímalová E, Honys D, Vágner M (2007) Ústav experimentální botaniky: Rostlinná biologie pro budoucnost. Vesmír 86: 720-721. PDF
2006
Honys D, Oh SA, Reňák D, Johnson A, Šolcová B, Boudová R, Twell D (2006) Identification of microspore-active promoters that allow targeted manipulation of gene expression at early stages of microgametogenesis in Arabidopsis. BMC Plant Biology 6(1):31.
Bock KW, Honys D, Ward JM, Padmanaban S, Nawrocki EP, Hirschi KD, Twell D, Sze H (2006) Integrating membrane transport with male gametophyte development and function through transcriptomics. Plant Physiol 140: 1151-1168.
Novak, JP, Kim SY, Xu J, Modlich O, Volsky DJ, Honys D, Slonczewski JL, Bell DA, Blattner FR, Blumwald E, Boerma M, Cosio M, Gatalica Z, Hajduch M, Hidalgo J, McInnes RR, Miller MC, Penkowa M, Rolph M, Sottosanto J, St. Arnaud R, Szego MJ, Twell D, Wang C (2006) Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution. Biology Direct 1:27.
Lapčík O, Honys D, Koblovská R, Macková Z, Vítková M, Klejdus B (2006) Isoflavonoids are present in Arabidopsis thaliana despite the absence of any homologue to known isoflavonoid synthases. Plant Physiol Biochem 44: 106-114.
Honys D, Reňák D, Twell D (2006) Male gametophyte development and function. In: Jaime Teixeira da Silva (ed.) Floriculture, Ornamental and Plant Biotechnology: advances and topical issues (1st Edition), Global Science Books, London, 76-87.
Twell D, Oh SA, Honys D (2006) Pollen development, a genetic and transcriptomic view. In: Rui Malhó (ed.) Plant Cell Monographs vol. 3, The Pollen Tube. Springer-Verlag Berlin, Heidelberg, ISBN 3540311211, pp 15-45.
2005
Hrubá P, Honys D, Twell D, Čapková V, Tupý J (2005) Expression of genes for beta-galactosidases and beta-xylosidases during microspore and pollen development. Planta 220 (6): 931-940.
Hájek T, Honys D, Witters E, Čapková V (2005) Identification of stress-induced mitochondrial proteins in cultured tobacco cells. Physiol Plant 124: 12-24.
Hrubá P, Honys D, Tupý J (2005) Expression and thermotolerance of calreticulin during pollen development in tobacco. Sex Plant Reprod 18: 143-148.
2004
Hájek T, Honys D, Čapková V (2004) New method of plant mitochondria isolation and sub-fractionation for proteomic analyses. Plant Sci 167: 389-395.
Heitzeberg F, Chen I-P, Hartung F, Orel N, Angelis KJ, Puchta H (2004) The Rad17 homologue of Arabidopsis is involved in the regulation of DNA damage repair and homologous recombination. Plant J 38: 954-968.
Honys D, Twell D (2004) Transcriptome analysis of developing haploid male gametophytes in Arabidopsis thaliana. Genome Biology 5: R85.
Honys D, Twell D (2004) Male gametogenesis In: R.M. Goodman (ed.) Encyclopedia of Plant & Crop Science, Marcel Dekker Inc., New York, ISBN 0824709446.
Lalanne E, Honys D, Johnson A, Borner G, Dupree P, Grossniklaus U, Twell D (2004) AtPIGC and AtPIGA, two components of the glycosylphosphatidylinositol anchor biosynthetic pathway, are required for pollen germination and tube growth in Arabidopsis. Plant Cell 16: 229-240.
Pokorná J, Schwarzerová K, Zelenková S, Petrášek J, Janotová I, Čapková V, Opatrný Z (2004) Sites of actin filament initiation and reorganization in cold-treated tobacco cells. Plant Cell & Environ 27: 641-653.
Sze H, Padmanaban S, Cellier F, Honys D, Cheng NH, Bock KW, Conéjero G, Li X, Twell D, Ward JM, Hirschi KD (2004) Expression patterns of a novel AtCHX gene family highlight potential roles in osmotic adjustment and K+ homeostasis in pollen development. Plant Physiol 136: 2532-2547.
Takeda S, Tadele Z, Hofmann I, Probst AV, Angelis KJ, Kaya H, Araki T, Mengiste T, Mittelsten Scheid O, Shibahara K, Scheel D, Paszkowski J (2004) BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis. Genes Dev 18: 782-793.
2003
Honys D, Twell D (2003) Comparative analysis of Arabidopsis pollen transcriptome. Plant Physiol 132: 640-652.
Motyka V, Vaňková R, Čapková V, Petrášek J, Kamínek M, Schmülling T (2003) Citokinin-induced upregulation of cytokinin oxidase activity in tobacco includes changes in enzyme glycosylation and secretion. Physiol Plant 1117: 11-21.
Schwarzerová K, Pokorná J, Petrášek J, Zelenková S, Čapková V, Janotová I, Opatrný Z (2003) The structure of cortical cytoplasm in cold-treated tobacco cells. The role of the cytoskeleton and the endomembrane system. Cell Biol Int 27:263-265.
2002
Hartung F, Angelis KJ, Meister A, Schubert I, Melzer M, Puchta H (2002) An archaebacterial topoisomerase homolog not present in other eukaryotes is indispensable for cell proliferation of plants. Curr Biol 12: 1787-1791.
2001
Fidlerová A, Smýkal P, Tupý J, Čapková V (2001) Glycoproteins 66 and 69 kDa of pollen tube wall: properties and distribution in Angiosperms. J Plant Physiol 158: 1367-1374.
Haisel D, Hofman P, Vágner M, Lipavská H, Tichá I, Schäfer C, Čapková V (2001) Ex vitro phenotype stability is affected by in vitro cultivation. Biol Plant 44: 321-324.
Honys D (2001) Isolation of proteins comprising native gene-specific messenger ribonucleoprotein particles using paramagnetic beads. Plant Sci 161: 605-611.
Kadleček P, Tichá I, Haisel D, Čapková V, Schäfer Ch (2001) Importance of in vitro pretreatment for ex vitro acclimation and growth. Plant Sci 161: 695-701.
Menke M, Chen I-P, Angelis KJ, Schubert I (2001) DNA damage and repair in Arabidopsis thaliana as measured by the comet assay after treatment with different classes of genotoxins. Mutation Res 493: 87-93.
2000
Angelis KJ, McGuffie M, Menke M, Schubert I (2000) Adaptation to alkylation damage in DNA measured by the comet assay. Environ Mol Mutagenesis 36: 146-150.
Honys D, Combe JP, Twell D, Čapková V (2000) The translationally repressed pollen-specific ntp303 mRNA is stored in non-polysomal mRNPs during pollen maturation. Sex Plant Reprod 13: 135-144.
Honys D, Čapková V (2000) Temporal changes in the RNA distribution between polysomes and postpolysomal ribonucleoprotein particles in tobacco male gametophyte. Biol Plant 43(4): 517-522.
Mašek T, Smýkal P, Janotová I, Honys D, Čapková V, Pechan PM (2000) Isolation of a Brassica napus L. cDNA encoding a putative high-mobility-group HMG I/Y protein. Plant Sci 159: 197-204.
Menke M, Angelis KJ, Schubert I (2000) Detection of specific DNA lesions by a combination of comet assay and FISH in plants. Environ Mol Mutagenesis 35: 132-138.
Wittink FRA, Knuiman B, Derksen J, Čapková V, Twell D, Schrauwen JAM, Wullems GJ (2000) The pollen-specific gene ntp303 encodes a 69-kDa glycoprotein associated with the vegetative membrane and the cell wall. Sex Plant Reprod 12: 276-284.